AXLE

Self-Regulation: Autophagy and the Triple-Alpha Process as dm³ Generative Transitions

Chapter A — Principia Orthogona, Book 3: The Mini-Beast

Author: Pablo Nogueira Grossi, G6 LLC, Newark NJ ORCID: 0009-0000-6496-2186 Zenodo (this deposit): https://doi.org/10.5281/zenodo.20168812 Series root: https://doi.org/10.5281/zenodo.19117400 AXLE repository: https://github.com/TOTOGT/AXLE License: MIT (code, Lean 4); CC BY 4.0 (paper, figures)


Deposit contents

File Description
autophagy_dm3.pdf Main paper, 8 pages, all 4 figures embedded
tex/autophagy_dm3.tex LaTeX source (9 bibitems, all sections)
lean/AutophagyDm3_v2.lean Lean 4/Mathlib4 — 26 theorems, zero actual sorry; obligation 1 closed, 2 strengthened, 3 split
code/autophagy_dm3.py Python simulation and figure generator
figures/fig_A1_t40_fold.pdf Triple-alpha T⁴⁰ fold (maps to V_critical_at_one)
figures/fig_A2_phase_portrait.pdf dm³ phase portrait, both systems (maps to gronwall_radius, basin_asymmetry)
figures/fig_A3_whitney_potential.pdf Whitney A₁ fold potential (maps to V_factored, V_at_one, mu_canonical)
figures/fig_A4_coherence_bridge.pdf Coherence Bridge full table chart (maps to mu_dm3_neg)
figures/coherence_bridge.csv Raw data for fig_A4 and Table 1

Lean 4 verification summary (AutophagyDm3.lean)

18 theorems proved without sorry:

Theorem Statement
contactCoeff_neg c(ρ) = −2ρ < 0 for ρ > 0
contactCoeff_ne_zero c(ρ) ≠ 0
V_critical_at_one V′(1) = 0
V_second_deriv_at_one V″(1) = 6
V_second_deriv_ne_zero V″(1) ≠ 0
V_at_one V(1) = −2
V_factored V(q)+2 = (q−1)²(q+2)
V_double_root corollary of V_factored
mu_canonical −V″(1)/2 = −3
mu_dm3, mu_dm3_neg −2 < 0
gronwall_radius ε₀ = 1/3
gronwall_radius_pos, gronwall_radius_lt_one 0 < 1/3 < 1
basin_asymmetry 1/3 < 4/5
Φ_pos, dΦ_pos, dΦ_at_threshold stability functional
contactForm_nondeg_scalar c(ρ) ≠ 0 — obligation 1 CLOSED
contactForm_orientation c(ρ) < 0 for ρ > 0 — obligation 1 CLOSED
V_is_morse_at_one V is Morse at q=1 — obligation 2 local model
whitneyFold_conditional conditional on σ Morse — obligation 2 STRENGTHENED
dm3_basin_compact annulus [1/3, 2] is compact — obligation 3 partial
dm3_basin_nonempty annulus is non-empty — obligation 3 partial

3 open obligations (AXLE Issue #14):


Reproduce figures

pip install numpy matplotlib
python3 code/autophagy_dm3.py --out figures

Paper DOI
Principia Orthogona series root https://doi.org/10.5281/zenodo.19117400
DNLS companion paper https://doi.org/10.5281/zenodo.20026942
Fruit-fly / MultiOrbitBioSwarm https://doi.org/10.5281/zenodo.19210136
AXLE repository https://github.com/TOTOGT/AXLE